NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10001014

Scaffold Ga0210394_10001014


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10001014 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48672
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023643Metagenome / Metatranscriptome209Y
F029168Metagenome / Metatranscriptome189Y
F071438Metagenome / Metatranscriptome122N
F086030Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000101414F086030GGAGMSVQLSQQLEQVQSDLSRKLNEAERIADCLVELGIRLQREPWKWSLGWLEDAFPVTNSISPVESEIVDALDRNRLEWLLEDIRMLKRRETELKRLAAA
Ga0210394_1000101416F071438AGAAGGMAPTAGHEIVSEEARTLAHKAMQKPNWRISADTWAVALALVLTALVWSGWIKRIPW
Ga0210394_1000101437F023643GAGGMLIECILISSSLCQSVKAKPAKPVLERKQNAIVAVLKDRPVMTLMTVDVIAKTMDYRQTQRDFLLGGFQEHNAMLRPMLGHTAAMYAYGAAYAMGAAWVGHKMRTSRFGIVRKLWWLPQTYSIEQNVYGYVYTRAHYTR
Ga0210394_1000101447F029168GGAGLRGSVRGNKLPLLAFLLALVLTAAILYGRHGGSTPKPWNSSAITATYVGAQLRELDSGSAAVYLAYEVQNHTDSDYQLADGPRALVMSRLRADGSLSSQELVRLSYPTFLPARQRARVALEIPSTFTWPADNDPAFQDRLRDLVNQKLTEVQAFVLFDQADRFEIEFPSGWQDLKIASALPR
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