NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10001274

Scaffold Ga0210394_10001274


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10001274 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41520
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (57.58%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001450Metagenome / Metatranscriptome692Y
F002623Metagenome / Metatranscriptome542Y
F004287Metagenome / Metatranscriptome445Y
F008315Metagenome / Metatranscriptome335Y
F011314Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000127417F004287AGGAVTPNIAPPSSTIAPASAPRDFAADSRRGPRDILVETRSNADASATAAIASISDQDWHISRTHGVYHLPARAPGEPYALVTITSRGDALDLGDNRRFPFTISARDIAEDLLQDLREHGIFVCAGERPSAEELASATARRDAYYHQLISEGDTMWARGHSFREISDLHRRAAIALGVEREWAYVPTRFADCPACGEKVKPSVAVCKHCGAILDAEKAAEHGLGANSGSAATRATSPPPAPTR
Ga0210394_1000127418F001450N/AVPSKSRNSAPPRIRVTRETHHTPAAIAARITRAGGTNRYGEPNFRVVWGGARLTWIGGRWTDRDAHGNISREAIELRQVPKYLPVDRWHIERWMPPEFYGSPDQWRALTSETEDGIRIPALGPYPARGDYEHCFTLQTNAGEFEPLNAAACDYIVRAIEWSRRQTRTDQRAAIAQRESRRARDWDRTADAALDAVFTP
Ga0210394_100012743F008315GGAVPQLLKFLEANAWPLAVTSLVQFVVFLRWIYRRIRNDELTRAFVEDMATNHLPHIYEMLEKLCDKQGIERDPAPTIRWIDLNDRSN
Ga0210394_1000127430F011314AGGAGMSASKTTIGYIVQLGGIGAFALGAVLSFHHVAIAASFAGGAAAFYVGKKIRALNTPAPASTVVPTK
Ga0210394_100012745F002623N/AMHVRPYTSADLDALRRIHARQDFDYAFPDLGDPIFISKLVVDDDAGRPVCASLARITCEMYLVADPDAGTPRERYARILALHDAGARDLLSRGFDDAHAWLPPPIARRFGHRLEALGWIRDDAWTPYCRRLR
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