NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10001596

Scaffold Ga0210394_10001596


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10001596 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35289
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (77.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027299Metagenome195Y
F073174Metagenome / Metatranscriptome120Y
F092532Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100015962F027299AGGAGMLKSLLKSLLILAVFVPFAAALPVAALWLCRTPDGAQFLFWVGPWSCCFWVLIYSQLSAAPWRQGAEAVHRWREANGGLLHTSIQATGWMFGALICSYVAEFTMLFLFRPSPSSRALLPVFTYSPLAFAWIWRHARG
Ga0210394_1000159631F073174N/AMEYRDNNPEVLAVVPLPSAEERRRREVVLARTMLLAIDIILSGEPLGLVIARDLFHEVRYAYPELVDECL
Ga0210394_1000159639F092532GGAGGMVSKETSTRGAGKGQRLSSGTRDQLIRDLQRVHKVFPTANPDRDFYRVHGKYSDAAVKVHFSRFKDFAAAAVPEMTPDEAFKLAVRSLDRAIDLIQKWHEDAKYGEGWVKHQIDAVNARVHELDELFYIWRYIKEMDKEEEAAKAEPEIKTVMLPDPEFLKEKQ
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