NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10001677

Scaffold Ga0210394_10001677


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10001677 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33898
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (65.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011329Metagenome / Metatranscriptome292Y
F013828Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000167710F011329N/AMTHGFDIQFCGNLEACRTEARILRPSTLPDDALVALVYETSHGLIVSYFGSAVANPTLPGLDAAIAEARSELLHYLNRRGENPPKGITRPGLSLWLTERDDETVMGIPLK
Ga0210394_100016779F013828GGAGMRGWSCAAGVGRQCASAALVRPRRQGRRLSKWRYAVALPFLTSFSGCIEVTTYVSPSASGTVIDAASQKPVQGAAISVDGHPGLFAQTNSDGQFLLLPATRKTRIFVLAPYESHLPSGTLVVSADGYASKEIVVKGSANSLLVSLNRVR

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