NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10002260

Scaffold Ga0210394_10002260


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10002260 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26908
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017625Metagenome / Metatranscriptome239Y
F018762Metagenome233Y
F055628Metagenome / Metatranscriptome138Y
F094175Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000226011F017625N/AMPRKKRPQRDDFSEVEFRDFLKTYLSEAFPNRQRIGCPPDSDLQRMAECPVEARDAEVSEHLTCCSPCFRRYIEILAGLKRKA
Ga0210394_1000226013F055628N/AMRDQPLSLVSIILSFALFSSAGCTLRRDISGVWKGSIESTDKRGHKWQGPAELTLSQNGNAITGTLVFTPPQAGRVQVPITSGVVSKDSLTFSGQNQLPMASVEISFHGSVSGTTLSGTAEITSRSIILGPATETASLSLQKQ
Ga0210394_100022605F018762AGGAMRRHFRTFVVLSFAAAVGLLVPVTARAFIGTMPVIDWTAVVRIGQQIGISKDTLNTLGLYVQQYNRVNAGTQEGIGLVRGRRLQGILNQGVGSEFPQFQQLQRDFTTATVDPSTLRGDLEETYGAIPSMDFPISRKKRMDSADATATLGLLESSRAELISQQEELDADDIESRAAMASPAGAAKLSAAANGAMLRSQAYDQRLLARMMRLEALNIARDNSLEKEQEQVRQAQLTTVSNMVGGMRLSYGIGDQVGH
Ga0210394_100022607F094175AGGAVIGWAIVMRLVGDHIHRVFLGFVPVSTVMTYGSAVLLVGLIRWAKHGKPRGYLVAWIQYYFRTKAHCAHCGSLEMPYLIEGEQ
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