NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10286747

Scaffold Ga0210394_10286747


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10286747 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1443
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001015Metagenome / Metatranscriptome805Y
F042986Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_102867472F001015AGGAGMFAHLTCQGPRAPAGPALGPGSFRRIVDVPFETCVTELDSWQQAEQGGEVRFGDSLLCGPAERDPGSATYRIQVRLARGALRPLLRMRIDIDRWSSSSTALELIPAGHVRPTAAYFRAGHLLLDSLTRHLLQPSPPAQVRDTASRPPAPVGAGRP
Ga0210394_102867473F042986AGGAGGMSDPLDVHRILEHCMQTIEAGREAMAHDMYDAAMRLGAAEMMLASASHAVHKHAAALPQVPTQPGSVAEQGGEGA
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