NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10340887

Scaffold Ga0210394_10340887


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10340887 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1317
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019896Metagenome / Metatranscriptome227Y
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0210394_103408871F019896N/ALRTGRPTAISLNGLRFDRSLWTFQNSQLGTDVASRLKADDAPIPVKITQSEPGIAEVAPGEIRLGVMALELPAAKPDARKAQPTVLQILFPVDRSGNLTATLVL
Ga0210394_103408872F001473GGAGMEPEYQTVSQMYERLLLMIRQRNDTGFRLAVTDAVLQPRNPFAPANKRRPKPTVAIAVSLIVVLTLVFLYFSFQHKG
Ga0210394_103408874F025071AGGMIHHSENPRREISNGEAGVVGAVLGFGLVALALYLAVARFHIRKEQLVEAALYLFIITAAVLTPVLRKFSKPRQRTKRPPFVIPARKD
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