NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10000073

Scaffold Ga0213866_10000073


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10000073 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81018
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (51.28%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009329Metagenome / Metatranscriptome319Y
F048627Metagenome / Metatranscriptome148Y
F067478Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_10000073100F067478AGGAGMSIATYRGVKYNTEIPKEEYQKWYSATHAPAHPANTYRGVPYRPCNNSEVAK
Ga0213866_1000007379F048627N/AMNMRFVEELDNGDQVVTYFQVEEIDNKHYYVYNDVNHGPFVDQDAAVEAAYEDLILQATVTDGL
Ga0213866_1000007380F009329AGGAGMTPYELRFEIFKQSYNMLNDEFCVKYDTAREWNQHVGKQELEYPNFPTLGEVLERADIINSFVSETK
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