NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10000164

Scaffold Ga0213866_10000164


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10000164 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55533
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (54.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F007569Metagenome / Metatranscriptome348Y
F065729Metagenome / Metatranscriptome127N
F085690Metagenome / Metatranscriptome111Y
F087124Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000016439F085690N/AMNYLITYYYKNDLEQRHQRHKTMAVAIATANLLIAHGHYVIDSITTEYGVEE
Ga0213866_1000016440F000919GGAGVRFRNIEFRWSKCNNKYELVKWNTPTEDSFFKDPTCYVIAFFDKGSEGYDMRTIGNRFFEDKDAWVVGKYGLEFLNEIFQIEQDEEELK
Ga0213866_1000016442F065729GGAGMKKLEFRPVTITYVRTMMLTPTSETFEDWDVEPTQESVYEWAVEEFLTTIEEEAKDGEWRNFTIITEDQPPVEVEWGDEDT
Ga0213866_1000016452F087124N/AMNLTFKQHVILLSGLTLLYDSAEKVNNSEMQHEILELSDIITEYAERRQRADERRNAKS
Ga0213866_1000016456F007569N/AMGMNFTDEQYKLIYNAVRRYQIEKTILNSEEYNECDVILTDLFPYVYTQQQEQPT
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Institute for Fundamental Biomedical Research
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