NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10000522

Scaffold Ga0213866_10000522


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10000522 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30768
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F039123Metagenome164N
F070064Metagenome / Metatranscriptome123Y
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000052226F088835GAGMMRDIDATEYIIANQLNYLSGRVVHLITEYGVTKDIQLLEEACRDLATLVQRERFIEERFGADCSD
Ga0213866_1000052228F082548GGAGMRSPRVVAQDMVKAMDAAAKQVWDSEPKKESDEKLKALVFAHVCNSYARRGGYGKTEATD
Ga0213866_1000052230F018178GAGMVEWKYSLTIQANQVWATKPLLNVICGRVKIDRMDQILDRLSQRINEWEGASREAIEAETNFKSFEASSQKAHMDAGASAAKAQTETRSSGEWANHYRTVQQASLKAETLKKKIMLGQLAFDAERTKQANQRRIV
Ga0213866_1000052233F070064GGAGGMGRVKSEMFEDNLGPDDELVPLPVSQVVDNIRNCDLPTNSVERHEYLRTQLKELMNGIRTNAN
Ga0213866_1000052238F039123GGAGGVDKHDFTALYEQWFALHPFKKRDWPELGKVHYQAFSRESVSLMTEALGQLTEEIDNFPSPKQIRAKLNQLSSSKTEGGEAKTNVTSHNETLATRLCEHLYEIKYNGKAVKRPEGVPNWVVNVVNEANERLPEDCPMNIRLARVGLAVAQGER
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