NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10001881

Scaffold Ga0213866_10001881


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10001881 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15289
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045686Metagenome152Y
F057282Metagenome136N
F101066Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000188132F057282AGGMANMTKLEIGEKVEVLITKLTVMEEKIDHLTEGLDNANKRIEDLDKSINMAKGGLKVLVVIGTVVAILVGFVKLLGVIK
Ga0213866_100018817F101066GGAMSNPQSYIIVENDDGTYTAYVNFGSWTTKEEAEHNLDLAMRMLGMQLTKSPTVH
Ga0213866_100018818F045686N/AMNVYHITNKSIQFFLDLFKFDNATQGIDKFVEVEFKPQDREWAKIHFMNRFSQ
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