NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10004911

Scaffold Ga0213866_10004911


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10004911 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8759
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022001Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_100049111F022001N/ACQPEFDELGVFTDRPRKYRNVEYSKEKIHSEYTPKWVKGAEGYMQSTITADGSNWIHLAAENNITIDNLDNDMRECKVFLYPYNKPDILEKVWLDKTNDKLVDQLNYSQRAWIRKLGYQEEIEKNRVYAFNTERLSGEGVRTNTFIDHFFSAAAGFKPLAILNANGFHEGTTVHYFDWCEASLNYKKHLLETWDGYDLDKWLLENDLQYNFSSTYRANYKQFWEQELKEFGGNLAFQRLWSRYRDLTHEFHVIDIVKDSDKLFDIIDNVHGTKVLWTTNIWSSEMLQWNMEPEELEKHYTKFKSRVKNLVVYGHDYCGIDLNDSVKGNYTHVKF
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Institute for Fundamental Biomedical Research
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