NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10006533

Scaffold Ga0213866_10006533


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10006533 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7458
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F020172Metagenome / Metatranscriptome225N
F064230Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000653314F020172N/AMCTTVKRAMFCTRNGYKHIENLDKVCVLIGRLKGLTESEYLDLCAVSKLENARALEMAKHYPAH
Ga0213866_100065337F017135GAGGVIPVISCPLPGGGNVLIKTQDIGGATTAKNPKECDVYILGWAADGITVDLSLDDFADIWVSALLDEGVGYEIVFTPDGLH
Ga0213866_100065338F064230GGAGMKSYLPQMDCTECFKVMVPQFKKEYPHKLEGWSCDCGNSEKAILRERQYTREDDGSQARA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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