NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10051046

Scaffold Ga0213866_10051046


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10051046 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2345
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010994Metagenome296Y
F045713Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_100510461F045713AGAAGMKGRIWEGNCIYLKCTDGMIEGRFVFPCPPDAQVLGSLMGRLAEGIEVITCTDDDDDE
Ga0213866_100510463F010994N/AMELPSLRHFRNEGIYFVFSDPVEALIGEAWVPAVYTDKGWATADGSTLLSAVEDWRYAVEEGQEQKGDAAKHQDRNQGRKTAKASGSNRIRKSRKITQAEG

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