NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10000052

Scaffold Ga0210384_10000052


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10000052 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)167633
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (57.66%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003854Metagenome / Metatranscriptome465Y
F005420Metagenome / Metatranscriptome401Y
F022992Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_100000521F022992N/ALKLLMTSYEVTGASVEEISNEVSRILETHHQLMKNTVSANTGQHVRLQFDVSGCNREQKQLLQKLKASTVLLGVTSLGRVDHE
Ga0210384_10000052134F003854AGGAGGMLATRSHLNRNPYFHFHPLHAAFSVIGSVILFGLLVWLLAVPAR
Ga0210384_1000005240F005420GGAGGMTRMLRFFAGMLLIAAASLAQTAEPTIYAESFRHGATRITEDAFDVKLTPENASYRERIKDSRGEDRYEMTVTPHVLVGGSQITFWEVKLADLRHRIYSNVLVAEQEPSPDARNNLWRLDPNRFSPVPIRARRIMKVDDFYVVIQVKDLHFTPLDSPYLDSMAVQFAFTNSDPRASH
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