NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10000070

Scaffold Ga0210384_10000070


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10000070 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148628
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)118 (83.10%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010343Metagenome / Metatranscriptome305Y
F013345Metagenome / Metatranscriptome272Y
F030512Metagenome / Metatranscriptome185Y
F073958Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_10000070126F010343AGGAGMQRKLVWVEEQGFQGWGCSECAWGFSPSGAPIGNSLDEMKENYERRRDKDFAAHVCAENPKPKNKMVR
Ga0210384_100000702F030512AGGAGMHTAVKECRLTPRETLSEPVLVRPFDPLFPEEICTTANVSRSGLYFLTPTKHYFVGMNVIVALNFGQDDPIHREQIGDVVRVEELDEDKRGVAIRILMHNNPGIYSGT
Ga0210384_1000007026F073958GAGGMKTPLLMRTFIVMLALEWELCSQDPFVFCYRMTVEPARDFLGRFGARG
Ga0210384_1000007029F013345AGGCGGMNDETIRREMIDESRAAYILGLPKQQLREICEMSGLGRLEEGTTAARLVFTYEELYRLCRLIVGPTS
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