NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10000679

Scaffold Ga0210384_10000679


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10000679 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50825
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (80.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001916Metagenome / Metatranscriptome617Y
F006994Metagenome / Metatranscriptome360Y
F011926Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1000067943F006994AGGAVAFGFDEGPDVFDFAGFADKEGAADDAHEGAAHELFFLPGAEFGDEFVGGVAEQGKIEVLLGLEGGLGFDGIGTEAEDGDVELVEIFFCVTKLGRFDGSTGGVGFGVEEEEDALAGEVGEGEDGAVVGFQREVGGFGADLEHGNSLRRILRA
Ga0210384_100006795F001916GGAGGLITRNQILSPSQEETLFSDHLITISGRSFTITSHDMLMMFVSVVTGLLFWTALYFSRKRVVVLKRSTGTDQVTFELSRIADALERIANRPADDAIAAASRRQQQVQPPLQRDSKGISYSMFGR
Ga0210384_100006799F011926AGGTGGMVLAALLLICSIPHMDDAAKLGSDSPAVASDAKTNDSSTPAPLPSMPAPKVKTDAEAIQPATPGQPFQPVRPAYTRPSETARERKIWYGLLLAGHSAAAFDAWSTKRAVVGGYGQETNPFLKPFAHSNAIYAATQVSPAVMDFIGKRMMTSEHRGIRRLWWVPQTFGAGFSIFAGAHNVGVVH
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