NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10088746

Scaffold Ga0210384_10088746


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10088746 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2778
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021659Metagenome / Metatranscriptome218N
F035064Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_100887461F021659AGGAGMYARLLTILAFALVVPTMAATTNSVIFNVRQENGVDQYYRLEVPPNLPPAKPDTGKVSQNEVPIIAVGWAGGLETTGGLTNLGASKPGGFYNASYIKVDSVQYQTSPVPYYLVQMNGKIGQTRQTFYAAVLEDGRIVRPTAISRPATPQRMTT
Ga0210384_100887463F035064AGGAGGMKILKRTVIQGTTIQLEDWEEHHPENRYAVLWKAKNEESRYSAKSLQDAEEYYTYRCLLMEQRRI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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