NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10272515

Scaffold Ga0210384_10272515


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10272515 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001673Metagenome / Metatranscriptome654Y
F008344Metagenome / Metatranscriptome335Y
F017206Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_102725151F017206N/AMLVRRNAAGVRLFTRHGHNLLLTSVAALLMTMSAAQARPELSKTESWKLTLGTWCVGEHPSDNGAYVGIARDQCGENEATLIIGENGYTWEREERLSCRYSSGKARFDNTIPASTKTVGVWVFHIVAGCIGKPSEDAVEKYTQSFDMYVSKGTLWIENLRSNRSHENRT
Ga0210384_102725152F008344AGGAVDLSMKTKTHFAFRVDIWDDTGDSIVEHVAGVDDFEVAEATYRAAILRWPRAWITLRQGARVIEDSQRLRVV
Ga0210384_102725153F001673AGCAGGMTMRRPWIGMASFVAVLLVLALGHRWSATASWFTSDKTCGERHGTPWFVERLGIDCDRLLRERLWKLYDEGQLGRLRGGRGGAVEYMKQLYMKQLEHPDE
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