NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10323684

Scaffold Ga0210384_10323684


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10323684 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1388
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051405Metagenome / Metatranscriptome144Y
F091468Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_103236843F051405N/AMRRKFQVGDKVKVVGMSPVTYAPGVKDELGTEKLFKSMLGKVYTVQGFDRYGNVELLPKRLNSVWVEPEFLKLRARKRKPK
Ga0210384_103236844F091468N/ATVEQLPARIKNVSLNCMLTRKCATLAAFVLVGILFGCTTCAAQKARYFKAEHGVAATYLELAIDGRYKVIDREHMGVMLTDEGHWQQTGAVITFSPKDPKKTSYRVTENIYRRRVFLAITSANAAAGIVITADDTKKALDADYVPDHVFFKINAKTYSSETKETYPFHLIGKER

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