NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_11147884

Scaffold Ga0210384_11147884


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_11147884 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)681
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008279Metagenome / Metatranscriptome336Y
F020963Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_111478841F020963AGCAGGMIMHQAGSPMTGFRPFFNPATGEWIEYTAIAEDNHGHLVRFSWRSVPGGVITEHIHPRQEERFTILTGEA
Ga0210384_111478842F008279N/ARAADVLIAVSGVAVIGVFSYAIKVTAGTAPRPAGPEARRIERSVTVATVIELVAAFVLPVIVIAAGRSDWVLPSIVITIGPLLLYLDHLVHIPRYRLVGWALTAGPVILVATMSGSSLAVTTGLAAGVVLLGTAAAGFHDLAGIRPARPARLSRKAR
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