NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000003

Scaffold Ga0210391_10000003


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000003 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586564
Total Scaffold Genes510 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)423 (82.94%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F007373Metagenome / Metatranscriptome352Y
F026083Metagenome / Metatranscriptome199Y
F060175Metagenome / Metatranscriptome133Y
F077562Metagenome / Metatranscriptome117Y
F090734Metagenome108Y
F092653Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000000319F007373GGAGGVSRSLQSHSLSNPALRPFDSNGMSTNARTPALCYTGSRITALSIEFVAQPNEAHKIHAALPAAIDGALGEVAGFAGSFVMIANHEARLVTVVTLWSGEDRMQRCNENVRWVRALLAPYLDRCLRVQTLAAYVPAAAEVPREFESSCAGETIESGLNEEAALCVA
Ga0210391_10000003211F060175GGAGGMRISRLEIAGGVALLLAVLSVGLLAQDQSSPSHEERLKAINLVRAINTAEFRYSMGTRKDANDGHGRFAGWTELYGSGLLNQLQVSGEGPEIIPGYRLDLIVSPDGNSFMVALHDRKEGDGLFSVFSDQTGIIYLGAPLQ
Ga0210391_10000003259F026083GGAGMEFETVYHPNLQLDLSEKREVWNTPGAFFVWMLVDGELAGESYGIPLASPTDFLDDLLVLPAREKENAVCCYSNTILPPFQKKGYGAILKAHWLGLAAGKGFDVVYGHARPGGSQALNAKFGAVFLEDLPNWFGSGEDYRKYRLVLDADSMS
Ga0210391_10000003461F092653GGAGGMKKRILLFISVLFLFAMPLLAQDDSHSKKTTNCSGTISQDGLSFVSDKDHRTWKIANPGALRDMEGHHAKLVYRLTSNAGEIFVTSASIVQEQPTVARNPGDSSFRP
Ga0210391_10000003497F000173GGAGGMKTFEVQFRYRDRNEETAESIVKVEGSSLPVAIGKATREFVKGLDRKERFDMNKNGLEITAKPIGAATEAEAAKQAAAS
Ga0210391_1000000390F090734GAGVQNRFADIWKSASRQIICVVMILFGSLLAANVSVGPCGGTALAVEPFPAILVAIFGLELILCSYFLVKKLKVESDFRVVIYLFLVLWSLSLLSGAVDIVGSGMPPAKENINDFYFSLLRGSAAVANLILFYRWVGAKNMITRLW
Ga0210391_1000000395F077562AGGMGAAWPFATFGYLMSTAGRLSGVLLGYGVPVSSPKPKRFQMTAGWLCLLAVALLYAPLAGAALLVYGVDCCVGGFCNVPEHHHHKQQPAPSEDSAPMDCGHGLSGMTPCSMSCCKDAARPALIPGAFVLPPSSFAPAVGEVLRPVKIASALEISQFLKPLSPPPRSAATVL
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