NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000191

Scaffold Ga0210391_10000191


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000191 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72875
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (67.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104849Metagenome100Y
F105590Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000019119F104849N/AMRVQNFPINASDAVHIYSDETHIWIQLRRDVPTEQDIGRSSFKVAFCLTPGTAHKVGLELMNIADKNKEKQKAKAVAGAKAPKAKGSA
Ga0210391_1000019121F105590AGGAGGMAFYRKQKDSTESDWRVPSVGMRWFGIIAAAFTALYGAFGVLRNDLNVSLSKSGLGVHLHGFLAWLCFFGMMMMSVGVVRFLSPPSDNGMFDFDERRRRFGPIFFIGLGLYFASQAIAGGRS
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Institute for Fundamental Biomedical Research
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