NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000345

Scaffold Ga0210391_10000345


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000345 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52003
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (84.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000503Metagenome / Metatranscriptome1073Y
F001621Metagenome / Metatranscriptome662Y
F002218Metagenome / Metatranscriptome582Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000034521F000503GAGMSAEPARRTIGMTLRQLVDLYLSLAGQFGQPVALSAFQLSPAETARLFSSYDEDYHISRFFHFAESDGVKFSINGIPATHVSIDPEINSIL
Ga0210391_1000034551F002218AGGAGGMKKSSSGQADQAIERVLELSVDAQITRRKTPKDSSAFHSLTGAIAAYGKALAILTALQRREEFYTIVARYELSGRIAAAS
Ga0210391_1000034552F001621GAGGMDNQVPKYVTQERAALLLGIPEEELSRISSELELGHTERAEDQEETFFTYEELRQICLLATHQSIGGKF
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