NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000560

Scaffold Ga0210391_10000560


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000560 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38165
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (64.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000901Metagenome / Metatranscriptome844Y
F020641Metagenome / Metatranscriptome222Y
F024747Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000056014F020641AGGAGLKHANVSRVTTLLLAGFVAVVALNIGVHATQTITTPNASKVSYNLAAGASSTAVTPAESVPVLVMGVQNDLGYRGVGQVAMLHVPSSFLEWTGIESPAAAAITSGFSGTAGTHILYLDYSHLVDIQVAGTDTFIIHNANTTAMAGVVTLIW
Ga0210391_1000056024F000901GGAGMAVNSAAAYGIYSQDVALADIVHTLNQAGFDNEDICMMLSPSHPIASIVRDASLFSSEREDSAASAGMIGWLSAFGAVLIPTVGFFIRSQAFLHALMTARETPALCGNARTLVGLGFPETDAIKFEDQLRGFGVLVYIACNESAKTLWAQEVLRHTGAQETATLQDNLESMMTTMSAAAS
Ga0210391_1000056030F024747N/AMPLPSPQHAARRAPRTRFNETTPAVLRFHNGCRTRGKLQIISITGGLLSLPKPLYQGSRVKLMFLTPKGSVFGAAEMLSPIDWGLQPFKFTRLHDDDEERLQAAIQSSLDQNRRSVAQVERFRVW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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