NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10002049

Scaffold Ga0210391_10002049


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10002049 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17687
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000536Metagenome / Metatranscriptome1044Y
F001619Metagenome / Metatranscriptome662Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000204919F001619N/AMLDWFRKLMQFKYVGLLEADVARLRAENRALTNSLLGTAGFPPVDFPEAPKPQILPRVRKRSWHQIQAWRANGAAREASADFDGKDHARTNGPVPHS
Ga0210391_100020493F000536N/AMVEFTPQQMQVLERLFAAGFRPIAIPPYESALCVRRGECVAVLSPIANGGLKLLAPPSYLVDGNLSVKLKRGAGEVFVWKKTELPATQERLQEIATFRQELTDILELPQTQ
Ga0210391_100020499F000188GGAGGMSVKPELAFDVCWEVYRGAREVMESKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERGWVNWTEEIRNRCGKELLRRGMFPPRKYFSEAA
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