Scaffold Ga0213920

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1000314 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021438 Open in IMG/M

Scaffold ID

Ga0213920_1000314 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42228
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (78.95%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42228

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (78.95%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012001	Metagenome / Metatranscriptome	284	Y
F014237	Metagenome	264	Y
F030002	Metagenome / Metatranscriptome	186	Y
F038567	Metagenome / Metatranscriptome	165	Y
F043817	Metagenome	155	Y
F060618	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100031422	F030002	AGGAGG	MAYRFTTPTISEGPAGEGRLFERFRLVRGVTVLKIDGEYYELRYPSSEEVESAEQAYIGGYSYEVSAAEKADLEAAGYTVETV
Ga0213920_100031439	F014237	AGGA	MATFKNVIMRIFAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFFLNDGSLSADEINAAFAKVDKKASE
Ga0213920_100031441	F012001	AGGAG	MFDIDKLKAIGLSYFRAAAASAVALYTAGQHDPKTLATAFLAGLVGPILKALDASAPEFGRTK
Ga0213920_100031453	F060618	GAG	MLIPVDGHFECSEPKCDFITCDLFEFMAHCGVEYEWGVRLNKRYTFDLFQFLEILNELTNMGDLDAMYDHIQSATLLMINASGDELEDFIEESIVQSEMSEVMDGIERLLKENE
Ga0213920_100031457	F043817	GGA	VVETEKYENLVAHIAYEFSRKFHMCDADDIRQELWIWFLEHPNKVKLWEALEGKQSTKLIARSLRNAAKDYCQREKARAVGYKVDDNYYYDREVVELLLPAVLRKDLNAPAMTELGFTKAKKVASEGGNWFAMMADIERSLERLTQEQLSIIYLRFGDGCDNASLATELAISEDAARMRVNRAVNNLLNFLGGSRPRKEWDYTEEQVNEQINADTRSDGDLSEVGDEVIGQDLD
Ga0213920_10003148	F038567	AGGGGG	VSNQPRHIPVPPTPYYYGVRAELFLHDAEEALKQGNTTEHARLMVRATHYAQLAGQLPLEEGHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213920_1000314

Overview

Ecosystem & Geography

Associated Families

Sequences