NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1000335

Scaffold Ga0213920_1000335


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1000335 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40013
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (80.28%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F002997Metagenome / Metatranscriptome514Y
F026565Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100033547F026565GGAMAIFNQNTLTQVSGFDNPIIAGELVWEQQTYWNLAIKASDNVTPLDLTGATIDAQIIRRAISNIQDTRNGLSFDIANYSPTPSPVSLTITNRSNAAGLFTLVIDDSAWGLIDSDPELDINAQDCVGFSGRIKISFPTAGSNPANDYIIFLLFLVRSDGIVVE
Ga0213920_100033548F000324AGGMTIRVEAKHTVTYDGASLYVFHPNKGEGLPRHQHAYSHLTMVHAGSVLVTKEGKSLTMTKDTKPVNLVANEWHELEALEDGTVFVNVFAEGKY
Ga0213920_100033554F002085GGAGMNVIAPVDGTTNIRHAEFVRVTTASGVYRFSTAPYAITVSAVDSQPFSGLSQLVAIGDATRDIKSTANETTVTLVGIDTALLGWVLGQNIKGSKIEMWHGFFNTDDQLLTSGGTGGLYKFFTGNVTSFQISETWDEDHKTYLGVITVSASSIQLILQNRTAGRFTNDNSWQFFNPGDTSMARVPYLESINYPFGKGASPNS
Ga0213920_100033555F000934GAGGMALTEILKNSESVGINDQRFIGQSISRNQKITTSEVLTVVPFIFEMRPMNYLLYSKSRALLNSLRIPDKALEQFLNFSSTGWVNYIQYQGDMTQPQIEACRWQTSSANKTLVLGSLPSIPSTKYIVKAGDFCQVGRYSYIATADVLRGSGTTVNIPVHRSLLAPVTVATVAVIGEFGNTVSLGGTSYTGVTFPVILREYPTYTLIPMTNDSYIQWSGIFKAMESVL
Ga0213920_100033563F002997N/AMAIARFEQITVNNLTFGESDFGEQSTTQTKWFDTRARVTDVANSLKISDKYRLYQDLTNFTLNYTPNIKQIVDAQNLFSITWRGADWRITDVREANDRMTVLLMCYRTDPQTSV
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