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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021438 Open in IMG/M |
| Scaffold ID | Ga0213920_1002075 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10046 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (57.89%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F002433 | Metagenome / Metatranscriptome | 559 | Y |
| F003182 | Metagenome / Metatranscriptome | 502 | Y |
| F010982 | Metagenome | 296 | N |
| F012452 | Metagenome | 280 | Y |
| F016643 | Metagenome | 245 | Y |
| F105053 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213920_100207512 | F002433 | N/A | MTVSEWTAVGGLVLAVLTAVYSAMRVIIKSIMKELTPNGGSSLKDQVSRIEQRLDYLYTRLIEDK |
| Ga0213920_100207513 | F105053 | GGAG | VADNISIIVIMSIAAILWAAITYSVGYKEGERVGFTRGRAVSRHISSSDKAVK |
| Ga0213920_100207514 | F012452 | AGGCGG | MGFLDNYEGNKERTDRWIATYPDGRLEAHVIEFNAEKGSILVQAKAWRNQNESEPAGIDYAFGYLAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATRETMQQVETMSAKVATADPKQDYDYWTTKFGNVPSFKNEDELSAAEKAQTIGGAIQEVTSQLGGEMLKEAPQCVHGHRVWREGVSAKTNKAWGNYSCVERKPNQCEPVWYVFTSDGTWKPQI |
| Ga0213920_100207515 | F000403 | GGA | MSDFMEIINPQTMMAKLLRNGEVVEEYKVEQCDKCSKLTKLDSFGYQKGYGDEKIIWFCGGCR |
| Ga0213920_100207516 | F010982 | AGAAG | MLDLPCVADYEVKPMILVRLSREDEIAAHKAGLERESRYGSNPKFNGNKGNFHNAVVIHSEAVGAEMAVARYFGIEDFVPTVNTFKNEPDIDLNGLGLEVKQTSHKQGHLIVTDDDRDTDIAVLVVGESPSYYVVGWIPVGVAKRPRFQSSQGGYWISQINLQPIETLKRSKYVTDIHSG |
| Ga0213920_100207517 | F003182 | GGAG | MSRTFILEFDCSICAKLYGKPKQRHGLKKSAELSLHEWFATCLGCGVFGVKLVDDDKIEAISL |
| Ga0213920_10020757 | F016643 | N/A | MTLFNPVWRVQIDGVSYTNFVLANLTINSGRTNIYEQAQAGYCNLQLLNIDQTQIAFTINNSVSIELKDSTNTFVPIFGGTIVDLGIEIAEVGSVGYTQRVNIVATGALSRLPKALTNGVLSKAYDGTQIYTILQDLLLNNWSEVAASVQWNTYNPTTTWANAENVGLGEIDRPGNYELAARTSNRTDIYSLVSGLATSGLGYIYEDGQGRISYADSTHRSTYLATNGYTDVSANQALASGIAIQTRAGDVRNSVTVKYDATSTSEVSAENATSISIFGRLSQIIQTTLHKAADATSQAAFYLSLRAYPLAMMQSITYELTNPEIDDSDRDALIRIFMGLPLRISDLPLNMNAGTYAGFVEGFEFRAAYNQIQVTALLSPLAFSIQAMKWETVLPLERWNTVSGTLEWQDATIVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |