NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1005057

Scaffold Ga0213920_1005057


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1005057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4944
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F002071Metagenome / Metatranscriptome596Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100505710F001043AGGAGMSEYKDGFDDGYKFAREEIIEKLREIDLADIDSWLLDRLSDMIEENKI
Ga0213920_100505712F000450AGGCGGMGDRANFVFVDGAGDTICLYGHWAGYNMLGRLADAVIAARPRWNDESYATRIAISHLIGDQWNMETGWGLQVNSIGDNEHKIAVINWKDQTFSLHEQDDHRNLENKVLGMKNEAIFTMDLVAFCEKYALERLLV
Ga0213920_10050572F002071AGGAMEIGQLYTTTQSGITGIIKAVDNHPSGVARILLDVDGKERWTSVVLN
Ga0213920_10050579F000311AGGAGMYFELTAPDSLTMEMAYFQAQLLGLDPTPMSSLTFNIGTGNIEKVSRIRDKFNLKETYTSDYEPTGYTRR
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