NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1010957

Scaffold Ga0213920_1010957


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1010957 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2653
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048001Metagenome149Y
F048269Metagenome / Metatranscriptome148Y
F087106Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10109573F048001AGGAGMANTEMQYVKNRIKQLESDMANLVMALIELKVFKVKIDENGNAVYDTGKDGE
Ga0213920_10109577F087106AGGMAANENTKFQVNYKLADGTLINLYATDVKDLETGLTDLSMVSALIKSTSAELGGVPVRTVEQIAKQFENPPVVSPPVTNYIEAPGSKACKHGPMAFKTGTSARGPWQGYMCNAPKGAPDKCETIWVR
Ga0213920_10109578F048269N/AELEKEKDSLKATFEGTTGVTPSGVEISWSTVKGRETVDAKEVEKLLGFVPKVVGNESVRLNIKTIGR
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