NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1027855

Scaffold Ga0213920_1027855


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1027855 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1312
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10278551F001915AGGAGMEWTLAHPLSDAVDIVWMADTFFGEEADGILKRDKAVFTKNVTIAATVQLFDKYREFLAVCRTPDERLLGFCWFDRGGYTTYASEEISNAKFHHVDLTLPAKTRVKLIHQMIDQHILWANVCGIPVICSTSIRADNEGFMKIHKQRGFTVNGSYAWIRTEKGMECLMK
Ga0213920_10278552F012670AGGMFDEIRPEGSIVSSEAKRADARARYAQKKAMKLATGEILPKIQETHNPAGRPKSIVNRVTEYGALFNKLNEERIAKGLSPLKTAMEVLIDAMQSDEIDIKDKAKIADKLAPFESSRAPIISIEHVNHVQKDE
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