NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213879_10042299

Scaffold Ga0213879_10042299


Overview

Basic Information
Taxon OID3300021439 Open in IMG/M
Scaffold IDGa0213879_10042299 Open in IMG/M
Source Dataset NameVellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1183
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.28Long. (o)-43.5919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039836Metagenome / Metatranscriptome163Y
F049049Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0213879_100422991F039836GAGMQVAVGQQWAIFSSKAQRWAVATVISVENGTVNLKYRDYPGFCHLAAVEMLRVHDDLQLLEPLEEITPRHWHG
Ga0213879_100422992F049049N/AMARSKKPPSWSPVAFERHGKAYSGKFYVDGRLITVLYNGRTKTTRLDDSDATAIASRLLSELLPEK

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