NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206685_10004900

Scaffold Ga0206685_10004900


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10004900 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4103
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042376Metagenome / Metatranscriptome158N
F047110Metagenome150Y
F089413Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0206685_1000490013F089413N/AMRVETQTHIRNQGIAIAEVRGALQILAQTNLVGKENIQTRLKHWESKLTDIQNRLTEIENSEDLEWLEDKAGIEA
Ga0206685_100049002F047110N/AMKNNKMKTVVSINWRIRDLIRDKLSFEKWHLDVFDSPAPKKVLNRIKAEAKELAEMKQAVLLAARDEAAA
Ga0206685_100049003F042376N/AMRNLINKWFRSEVKTYQGAMLRYFYAPVTGFALVLAIVCGFVIGFDEVWRYWRVAALNF

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