NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213878_10259660

Scaffold Ga0213878_10259660


Overview

Basic Information
Taxon OID3300021444 Open in IMG/M
Scaffold IDGa0213878_10259660 Open in IMG/M
Source Dataset NameVellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.28Long. (o)-43.5919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024750Metagenome / Metatranscriptome204Y
F067563Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0213878_102596601F067563N/ALLAEMVPSADQARAEFKAVLGQTPGGAITCPYCQQAVEYDTDGKSLVVSARVPFRYSRTKMERRATNYGSHKSPPDMAMTPEQWVAERKLMPGALHGYQYVEDDTP
Ga0213878_102596602F024750GAGGMKLTHEELEFLSAWAREEWEPACYELPAHRLQLAHGVAGAQLIVFIKAWTEGEGRKDQEILAAAVNPQPRWPWSTIEDFAGRLAEASERRTHREGMKKAPEPKVG
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