NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182009_10042010

Scaffold Ga0182009_10042010


Overview

Basic Information
Taxon OID3300021445 Open in IMG/M
Scaffold IDGa0182009_10042010 Open in IMG/M
Source Dataset NameBulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1895
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003450Metagenome486Y
F016445Metagenome247Y
F058370Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0182009_100420101F003450AGGAGMEPVNPTSPIEQQPRFIPWEEQLQDHTRKLEEYLQNLLFRGCTLETTIRSSRAVLNHLFDRLQIKDPTHPRGIRQLLVWELLDPGLGSSRLGLLISLLLQDDLAHGTRRKYIRELRSFCDYVLAKPNIPGSAVLTISEKYSPITQTFTKYDVPMHVQDRP
Ga0182009_100420102F016445N/AMSLMTKKTRIDARRVAEIIGCSRKTVLNGGAGTAQLTRIRNGSTQVRFILEEVLAFAEKQERDAQRRLPKNHSTITS
Ga0182009_100420103F058370GAGGVKNFHQYVGPGGQILHGYVRRYKNVRLRKKGFTSKAEAERHLRQAMNDIDAEERGEIRCKPTTAQEALNIYRRNQKVRARDKGYQYGHNVRSNCKIIQEFVDHFGPNRLIRECTETDLRE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.