 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021467 Open in IMG/M |
| Scaffold ID | Ga0190334_1000367 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23687 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (50.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036512 | Metagenome | 169 | N |
| F040420 | Metagenome | 161 | Y |
| F050064 | Metagenome | 145 | Y |
| F055334 | Metagenome | 138 | N |
| F076704 | Metagenome | 117 | N |
| F084956 | Metagenome | 111 | N |
| F084957 | Metagenome | 111 | N |
| F102256 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190334_100036712 | F102256 | AGAAG | MEREKTNIYSCRNCYLEFYYENRITHCPFCGNKLKWIGQIQENEIEGPIYTLKYSTGEKMQKKIEEEAAIKEAEESWYLWEE |
| Ga0190334_100036713 | F036512 | N/A | MGGIIKMYWKVPDYLKRYIRIQELLKNIFSPCDCGEELKKCEKDKKYYAKRAETLAKALAESINLPEPPNPSKEMEEVNPWKFVAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRENVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG |
| Ga0190334_100036716 | F040420 | N/A | MKNINRYIVIGLILSISLTQFLALDTTDTHIYVDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEQSIEIIEPQADEIIGYVKEDNKKYIRIPVWNDYFYYSNVKIA |
| Ga0190334_100036718 | F050064 | N/A | MTPSRKFNHIDDLPLNETQKRYVLEWLAWKFYNLLLKLGIEDGYCKSYDPLLIEDDKCHSYVFDLDDDGRHHPYKNLREIEDKLFNEVVKRIKEESVH |
| Ga0190334_100036721 | F084956 | N/A | MIRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDYHGTLSEVIQQFIAVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNAIYVTGDAVDEMATSNKEIYIEDDTILTEWDARQRAERELKTRNELTDAIEITLGDLVYPVFGKVRVNLPGIAKILELKSLRYILDENGLFTTLYLGRSYKSLSTIFRSLK |
| Ga0190334_100036725 | F084957 | AGGAGG | MNIEDYKKKNTKKIKCPSGLEVTVNNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVIGKDIEIEDFLREDYIFLHNLIFEKVTLPEE |
| Ga0190334_100036728 | F076704 | AGGAGG | MAEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSHLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH |
| Ga0190334_100036729 | F055334 | AGGA | MTSLVDKLNAVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMEKLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |