NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190334_1000912

Scaffold Ga0190334_1000912


Overview

Basic Information
Taxon OID3300021467 Open in IMG/M
Scaffold IDGa0190334_1000912 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13387
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (47.06%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F056227Metagenome137N
F059532Metagenome133N
F069552Metagenome123N
F096390Metagenome104N
F098395Metagenome103Y
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190334_100091215F069552AGGMKKNSIAWFVVECTKSITIQLRCFKCRFMFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCEEEYFLNNIVETDVSSRGFGTANIEVETTIPNDEEYQRLRRLINDWYKQKVDTFSFFLGIVMYTSYRDWRKMKELGVKFLELWRDGFSKIGWKPEDVSDYEYYFGKDGRSTPPKFLGTTTSWD
Ga0190334_100091217F038026GAGGMLKFMVYKNEDEYVLIIEYEDRAERLLASSIKDLIQVIADTILYNFEGKSKHFEQSHYAKVEIV
Ga0190334_100091223F056227N/AMEDKDNQILVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVRVPSTEYRDVNIDLRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190334_100091224F059532GAGMRNILLLGDLHCGSTEGLWHPDFVIREGQRVKLSPLQEELYDKWLLLQEQLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEILHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKNIYVL
Ga0190334_100091225F100149N/AMYWSKEEEEILKSLWKKPDMTAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIIL
Ga0190334_100091227F098395AGAAGMKIEVITPLDLEDFVKRIKNLEEDSKLHDSLLHDAFENIDQMKKRLNELEKRIKTLESDKEPYSESILD
Ga0190334_10009126F096390AGGAGGMADIIKEIINLFVYPITHEVEAHGKLLTDEEKEEMLQRAKKRYERELIKIFEKHDRL
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