NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190334_1001369

Scaffold Ga0190334_1001369


Overview

Basic Information
Taxon OID3300021467 Open in IMG/M
Scaffold IDGa0190334_1001369 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10632
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050821Metagenome144N
F057027Metagenome136N
F083515Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0190334_100136910F083515AGGAGGMKVRRFESIESLSKFLGKEESGEISVKKVTVVSHISDVFYVFYNEGQNYDITSKIIDFRNFLVREEKTLNDIIRSIEQERMYWQSVDSPTSKGISGYLSWLKDQLTMSAVAVNEMMRETKKLLMRRY
Ga0190334_10013692F057027N/AMARKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRRKAFKLNSGLATQMWRVVEKAGGDPLNMQGSVFTITSMGNYNYEVVYRKPAKEPEIVDERKIEGIVKKVISSGNIPKENISLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190334_10013693F050821GGAMIVKDMYCDSCKQETLHECQSNELWRCVQCQKTRFEVIDIPQNEIDWEKPVRYLWRSGDIAYVTSTLAPNILRLDEMKELLEGKRIRVPLFKIKDKFLLKYY
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