NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190334_1003170

Scaffold Ga0190334_1003170


Overview

Basic Information
Taxon OID3300021467 Open in IMG/M
Scaffold IDGa0190334_1003170 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6400
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y
F050064Metagenome145Y
F102256Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0190334_10031703F102256N/ALPNKKLSMSHYKLKVYSCKKCYLEFYYENHITHCPFCGNKLEYIGQVREDEIGEPVYLLKYSTGEKMKKKIEEEEAIKEAEESWYLWEE
Ga0190334_10031704F036512GGAGGMYWKVPNYLKRYIRIQDALRNIFRPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPSPSEGMEEINPWKFIAKYGKYDILTADKYYYTLPLNSWIKILSPIQTQVEKILPKWREDIADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190334_10031706F040420N/AMKNVNRYIVMGLILSISLSQFLALDTTDTHTYIDGTYVCRDFSRDLILSASKHHIYLDYIYMSEKNHIMVGLYNPLEESIEIIEPQTDEIIGCIKEDNKKYIRIPVWDNCFYYSNIKIA
Ga0190334_10031708F050064N/AMTPNRKFKNIDDLPLYESQKRYVLEWLAWKFYSLLLKLGIEDGYCKSYDPLLIEDDKCHSYVFDLDDGGRHHPYKNLREIEDKLFNEVVKRIKEESVH
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