NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190334_1008730

Scaffold Ga0190334_1008730


Overview

Basic Information
Taxon OID3300021467 Open in IMG/M
Scaffold IDGa0190334_1008730 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3567
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048033Metagenome148N
F057809Metagenome135N
F096388Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190334_10087301F057809AGAAGMQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFAFGVATAREQLAEEFLATGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPVDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEHEELDDYDRVSEDFFFLLKVQNEAKAKVIYAPSINVGHVGEVIVWDKDNIQFI
Ga0190334_10087305F096388N/AMIKVPILDNKENRNWFHQFEHPVYTMLGGNNKSVERKLKQDMKLLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNSFGDISVVFDFT
Ga0190334_10087306F048033AGGAGGMIVIRLGDMIVVNVDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQVEGEDLSEDMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVYFHTENFENGE
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