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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021468 Open in IMG/M |
| Scaffold ID | Ga0190360_1002127 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9838 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (46.15%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038026 | Metagenome | 166 | Y |
| F050821 | Metagenome | 144 | N |
| F056227 | Metagenome | 137 | N |
| F057027 | Metagenome | 136 | N |
| F098395 | Metagenome | 103 | Y |
| F100149 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190360_100212711 | F098395 | N/A | MKIEIITPLDLEDFVKRIESLEEDSKLHDGLLNDAFENIDQMKKRLNKLEKRIKHLESDREPYSKE |
| Ga0190360_100212712 | F100149 | N/A | MYWSKEEEEILKSLWKKPDMTAKIIKEQHLHHRTINAIQKKASSLGLTKEKIKIDYEKVNEIIL |
| Ga0190360_100212714 | F056227 | N/A | MEDKDNQILVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIVTPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVKVPSTDYRDVDIDLRIKIGSESTIKYSCIIKRPRNMDAKTILDEIKNKIE |
| Ga0190360_100212722 | F038026 | GAGG | MLKFMIDKNEDEYILIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSHYAKVEIM |
| Ga0190360_10021275 | F050821 | GGA | MIVKDMYCNHCKQETLHECQSNELWRCVQCQNTQFEIINIPQNEIDWERPVRYLWRSGNIAYVTSALTPDVLRLDEMKELIEGKRIRIPLFKIKDKFLPKYY |
| Ga0190360_10021276 | F057027 | AGGAGG | MARKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVNWTQPQILVRDLKDDRKKAFKLNSGLATQMWKVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |