NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190360_1002937

Scaffold Ga0190360_1002937


Overview

Basic Information
Taxon OID3300021468 Open in IMG/M
Scaffold IDGa0190360_1002937 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8170
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040420Metagenome161Y
F084956Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0190360_10029371F040420N/AAMNRFIIIGLMLTISLTQFLALDSIDSHSYIDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLENSIEIIEPQTDEIIGCVKEDDKNYIRIPVWNSCFYYSNVKIA
Ga0190360_10029376F084956N/AMRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQISTPDGWFTYFFPLVRAKVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSEAQCTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDFHGTLLEVIRQFVTLTGMDIESKSANDADTVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKSDEIKYTIDKNSKITSINVETSQEDSYRRCHVRGAKMGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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