NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190360_1011223

Scaffold Ga0190360_1011223


Overview

Basic Information
Taxon OID3300021468 Open in IMG/M
Scaffold IDGa0190360_1011223 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3840
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F056227Metagenome137N
F059532Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0190360_10112231F059532N/ADYEAVLLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVIITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKNIYVL
Ga0190360_10112232F056227N/AMEDKDIQVLVFHRDKDDKNWISRLFNGKVAILHRADPTIPQPNVPYLCKVDEKEKYAIAWILGLHAYPRAIITPPPRRFVYLESPGDKPAIHTDLFSIFDSHDLEYLYIRYPKENRKEADTPSTESYREVNIDLRIKIGSESTIKYSFTIKRPRNMDAKTILDEIKNKIK
Ga0190360_10112239F038026GAGGMLKFMIDKNEDEYILIIEYEDRAERLLASNLKDLVQAMADTTLYNFEGKSKYFEQSYHAKIEIT
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Institute for Fundamental Biomedical Research
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