NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190360_1018921

Scaffold Ga0190360_1018921


Overview

Basic Information
Taxon OID3300021468 Open in IMG/M
Scaffold IDGa0190360_1018921 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2868
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050821Metagenome144N
F057027Metagenome136N
F098395Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0190360_10189212F050821GGAMIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEIINIPENEIDWERPVRYLWRSGDIAYVTSALAPNILRLDEMNELIEGRRIRIPVFKIKDRFLPKYY
Ga0190360_10189213F057027AGGAGGMAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWKVVENAGGDPLNMEGSVFTITGMGNYSYEVVYRKPAKEPEIVDENKIEEIVKKVMSGGNKSKEEILLWVKEYLKVEGVQVSDVVIKSVVERVVG
Ga0190360_10189217F098395AGAAGMKIEVITPLDLEDFVKRIENLEEDSKLHDSLLHDVYENIDQMKKRLDGLEKQIKSLESDKEPYSKR
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