NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190360_1096093

Scaffold Ga0190360_1096093


Overview

Basic Information
Taxon OID3300021468 Open in IMG/M
Scaffold IDGa0190360_1096093 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1051
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043672Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0190360_10960931F043672AGGAGGMSGIKEPEQLDTGVTMIGSSGWGSQTGGIGSIMGSTWSERIVFDAQPDRVLSKYFLEFNDLMGNNDVTIVIPKIGDVNLMGGRTGSAEGVARVLTKFDTADNITVSLTSADVKLGGASISFETASATRVSIIEMAHKQLVRQYLNTIETDANNLLENATVGSSAAGAIYGGSTVADHTAVASGKGSLAAGDVIDVDKLVDMKIRLQEMDFAKKPGEAVLFIHPTQFKQLLKSSQFTNAAEFGSPSVVRRGVIEEYVGCVIEVSTLVSAATVAADSDYPNRGNWGAAGHFAYMIDPSAAAG
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