NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190361_1000828

Scaffold Ga0190361_1000828


Overview

Basic Information
Taxon OID3300021469 Open in IMG/M
Scaffold IDGa0190361_1000828 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12062
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F050821Metagenome144N
F056227Metagenome137N
F057027Metagenome136N
F059532Metagenome133N
F098395Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0190361_100082811F050821N/AMYCNYCKQETFHECQSNELWRCIHCQNTRFEIVNIPRNEIDWEKPVRYLWHSGDIAYVTSALAPDVLRLDEMRELLEGKRIRIPLFKIKDKFLPKYY
Ga0190361_100082812F057027AGGAGGMARKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRKKAFKLNSGLATQMWKVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEDIVKKVISSGNIPKENISLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190361_100082817F098395N/AMKIEVITPLDLEDFVKRIESLEEDSKLHDGLLHDVFENIDQLKKRLNELEKQIKHLESDREPYLKNNVLE
Ga0190361_100082819F059532GAGMRNILLLGDLHCGSTEGLWHPDFITREGQKIKLSPLQEELYDKWLLLQEKLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYDKHYIYIPGWNTIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKNIYVL
Ga0190361_100082820F056227N/AMEDKDTQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGDKPAIHTDILSIFDAHNLEYLYVKYPQENREEIKVPSTENYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190361_100082827F038026GGAMIYKNENDYVLIIEYEDRAERLLASSMKDLIQVMADTLLYNFEGKSKYFEQSHQAKIEII
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