NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190361_1000871

Scaffold Ga0190361_1000871


Overview

Basic Information
Taxon OID3300021469 Open in IMG/M
Scaffold IDGa0190361_1000871 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11694
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F050821Metagenome144N
F057026Metagenome136Y
F083515Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0190361_10008711F050821GGAMIVKDMYCDYCKQETLHECQSNELWRCVQCQKTRFEVIDIPQNEIDWEKPVRYLWRSGDIAYVTSALAPNILRLDEMKELIEGKRIR
Ga0190361_100087122F057026AGGGGGMGRDEQIQVLEEMVCLFEKAMEGLKSAYESTEDENQKLKLTGGILVFEFVINLIRQKMELLENEE
Ga0190361_100087123F033663GAGMGQESSEENITQVYGIRCKVKNDKIQDWDYDSLTNITFLYKQRRALFKDIQEDGMAVPEFFFEIRRDTLILRDLVLGKFNILLVIEEEN
Ga0190361_10008719F083515AGGAGGMKVRRFESIELLNKFLGKEESGEISVKKVTVVSHISDVFYVFYNEDKNYDIAGKIIDFRNFLVREEKTLDDIIQSIEKERIYWQTIDSPSSKIVLDYLSCLKDQLTISAVAVNEMMREMKKIINEEVLK
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