NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190361_1009829

Scaffold Ga0190361_1009829


Overview

Basic Information
Taxon OID3300021469 Open in IMG/M
Scaffold IDGa0190361_1009829 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3344
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076704Metagenome117N
F084957Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0190361_10098292F084957AGGAGGMNIEDYKKKNTKKIKCPSGLEVTVNNITPYTLLRIVDKLGINPAREEVYSKPVIDALFKAFLKEPVIGKDIEIEDFLREDYIFLHNLVFEKVTLSEE
Ga0190361_10098295F076704AGGAGGMAEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGAGQHLDLLTATGMYGESLQSCKILMNTTSNSPTADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.