NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190363_1000271

Scaffold Ga0190363_1000271


Overview

Basic Information
Taxon OID3300021472 Open in IMG/M
Scaffold IDGa0190363_1000271 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30028
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (85.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096385Metagenome104Y
F100147Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190363_100027125F096385AGGAGGMRLLVVGTEEDKTVIMDGMVPCVARIRGGEVVEMQRRADAGALIEKWLEAAKRNPIAKRQILKFIEKTGRRGRAQRDLLSELRRKGKIVLSGIV
Ga0190363_100027152F100147GGAMPKRSIFHGFIFAELQSFRKSNLDISVMVLQANVPIWDSTAYDRGFQIPADVLRKSVPKGCVPLFLFHDHRERLGHLCEFKYNPYKKALFAKLKILPKKKEKVLRLIKSEGINGISLELETLEERGRYLNKVLRMKITGAALVDRPACRKCRVKLFK
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